NetworkAnalyzer is a Java plugin for Cytoscape, a software platform for the analysis and visualization of molecular interaction networks. The plugin computes specific parameters describing the network topology. A typical analysis workflow using NetworkAnalyzer is described in this Nature Protocol.
We have made a step-by-step tutorial on how to use NetworkAnalyzer for spotting hub nodes in a network.
To request another feature, please write an e-mail to Mario Albrecht.